Payroll – basic procedures

Payroll is one of the core administrative responsibilities for UK employers. It involves calculating pay, deducting tax and National Insurance Contributions (NICs), reporting to HMRC, and meeting statutory deadlines. Getting payroll right protects your employees and keeps your business compliant.

Why Payroll Matters

Payroll affects:

  • Employee pay

  • Income tax (PAYE) and National Insurance

  • Pension contributions

  • HMRC reporting

  • Workplace benefits

Errors in payroll can lead to:

  • Penalties from HMRC

  • Underpaid or overpaid employees

  • Incorrect tax and NIC reporting

  • Employee dissatisfaction

Good systems and procedures ensure accuracy and compliance.

Registering as an Employer

Before you pay anyone:

  1. Register as an employer with HMRC

  2. Set up a payroll scheme

  3. Choose payroll software compatible with Real Time Information (RTI)

Employer registration must be done even if you are only paying yourself as a director.

Pay As You Earn (PAYE)

PAYE is the system through which employers deduct:

  • Income Tax

  • Employee National Insurance Contributions (NICs)

  • Student loan repayments (if applicable)

These deductions are made from employee pay before it is paid out.

Real Time Information (RTI)

Under the RTI system:

  • You report payroll information to HMRC each time you pay employees

  • Information includes earnings, tax, NICs and benefits

  • Reports must be submitted on or before the payroll date

RTI ensures HMRC has up‑to‑date records of employee payments and deductions.

Calculating Pay

To calculate net pay:

  1. Start with gross pay (salary, wages, bonuses)

  2. Deduct employee Income Tax under PAYE

  3. Deduct employee NICs

  4. Deduct student loan or other statutory deductions

  5. Add any approved benefits (taxable if applicable)

The remaining amount is the employee’s net pay — the money paid into their bank.

National Insurance Contributions

Employers must calculate and pay:

  • Employer NICs on employee earnings above thresholds

  • Employee NICs deducted at source via payroll

NIC rates and thresholds are set by HMRC and change periodically. Both employer and employee contributions must be reported through RTI.

Auto‑Enrolment and Workplace Pensions

Most employers must automatically enrol eligible employees into a workplace pension and make employer contributions.

Key points:

  • Employees must be informed of their enrolment rights

  • Contributions are deducted from pay and remitted to a pension provider

  • Your payroll system must integrate pension calculations

Applegrow can help ensure your payroll and pension processes work smoothly together.

Payslips and Records

Employees are legally entitled to a payslip showing:

  • Gross pay

  • Deductions (tax, NICs, student loan etc.)

  • Net pay

Payroll records must be kept for at least three years and should be accurate and accessible in case of HMRC enquiries.

Statutory Payments

Your payroll processes should also handle statutory pay where applicable:

  • Statutory Sick Pay (SSP)

  • Statutory Maternity, Paternity and Adoption Pay

  • Shared Parental Pay

Correctly calculating and reporting these payments helps ensure compliance.

Payroll Software and Compliance

Most businesses use payroll software to:

  • Automate calculations

  • Generate RTI reports

  • Produce payslips

  • Keep digital records

Software must be compatible with HMRC’s RTI system. Applegrow can advise on the right payroll solutions for your business.

Deadlines and HMRC Reporting

Key payroll deadlines include:

  • RTI submissions on or before each pay date

  • Employer PAYE payments to HMRC by the 19th of the following tax month

  • Annual forms, such as P11D (expenses and benefits) where needed

Late submissions or payments can lead to penalties and interest charges.

How Applegrow Can Help

Payroll compliance can be complex, especially if you employ staff for the first time.

Applegrow Financial Advisors can support you with:

  • Payroll setup and RTI registration

  • Choosing and configuring payroll software

  • Pension auto‑enrolment compliance

  • PAYE, NICs and statutory deduction calculations

  • Year‑end reporting and employee payslips

With our guidance, you can run payroll accurately, meet HMRC obligations, and keep your employees paid on time.

Need help with payroll procedures?

Contact Applegrow Financial Advisors today for tailored support with UK payroll compliance and reporting!